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Public Chado Databases
From GMOD
Contents
Public Chado Genome Database Releases
Chado PostgreSQL Dumps
These projects provide Chado database dumps that you can copy and learn from.
- FlyBase: ftp://ftp.flybase.org/releases/current/psql/ - Contains 12 Drosophila genomes.
- ParameciumDB: http://paramecium.cgm.cnrs-gif.fr/download/sql/
- Yeast: http://sgdlite.princeton.edu/download/sgdlite/
- VectorBase: ftp://ftp.vectorbase.org/public_data/databases/chado/
Please add to this list, if you have a Chado database to share, or know of someone who does. If you have a public Chado database, please consider adding an export dump file.
pg_dump -f mychado.dump mychado
Direct Chado Access
FlyBase
GeneDB
The following connection information is for the preliminary GeneDB Chado database. This database currently contains Plasmodium genomes; more organisms will be added during 2008. This is currently a pre-release database, which may change or disappear without warning.
hostname: db.genedb.org
port: 5432
username: genedb_ro
password: no password
database name: snapshot
e.g.
psql -h db.genedb.org -U genedb_ro snapshot