From GMOD

This page contains links to documentation pages for the current version of JBrowse (1.2.1).

Contents 1 Installation 2 Usage Notes 3 Tutorials 4 See also

Installation

• Installing JBrowse on Mac OS X and Linux

Usage Notes

• General Usage, including information about:
  • The JBrowse user interface
  • Creating sequence tracks (e.g. from FASTA files, or a Chado database)
  • Creating feature tracks (e.g. from BED or GFF files, a Chado database, or the UCSC genome browser)
  • Creating image tracks (e.g. from WIG files)
  • Making features searchable by name
  • Removing tracks

• Additional topics:
  • Using Configuration Files
  • Using a Database

Tutorials

• JBrowse Tutorial from the 2010 GMOD Summer School
• Quick JBrowse Tutorial from BioWiki

See also

• JBrowseDev/Main
• JBrowseDev/Upcoming