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Publications
From GMOD
Revision as of 20:26, 10 July 2012 by Girlwithglasses (Talk | contribs)
The following is a partial listing of publications/references describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.
Articles
- Choosing a genome browser for a Model Organism Database: surveying the Maize community. [1] PDF
- PopGenIE: The Populus Genome Integrative Explorer. [2]
- A Chado case study: an ontology-based modular schema for representing genome-associated biological information. [3]
- Celsius: a community resource for Affymetrix microarray data [4] PDF
- Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [5] (See YSB.)
- The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. [6]
- AphidBase: a database for aphid genomic resources. [7]
- DroSpeGe: rapid access database for new Drosophila species genomes. [8] PDF
- T1DBase: integration and presentation of complex data for type 1 diabetes research. [9]
- Gbrowse Moby: a Web-based browser for BioMoby Services. [10]
- ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [11] PDF
- Expanded protein information at SGD: new pages and proteome browser. [12]
- SwissRegulon: a database of genome-wide annotations of regulatory sites. [13]
- KISS: the kinetoplastid RNA editing sequence search tool. [14]
- BeetleBase: the model organism database for Tribolium castaneum. [15] PDF
- Xanthusbase: adapting wikipedia principles to a model organism database. [16]
- SynView: a GBrowse-compatible approach to visualizing comparative genome data. [17]
- OryGenesDB: a database for rice reverse genetics. [18]
- SynBrowse: a synteny browser for comparative sequence analysis. [19] PDF
- FPC Web tools for rice, maize, and distribution. [20]
- Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. [21]
- wFleaBase: the Daphnia genome database. [22] PDF
- The Legume Information System (LIS): an integrated information resource for comparative legume biology. [23]
- Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [24]
- Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. [25]
- Caryoscope: an Open Source Java application for viewing microarray data in a genomic context. [26]
- ATIDB: Arabidopsis thaliana insertion database. [27] PDF
- Apollo: a sequence annotation editor. [28] PDF
- The generic genome browser (GBrowse): a building block for a model organism system database. [29] PDF
Bibliography
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