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− | {{ImageCenter|ApolloLogo.png||300|http://gmod.org/wiki/Apollo#Logo|}}
| + | Apollo documentation, mailing lists, is now actively maintained at [http://genomearchitect.org Genome Architect]. |
− | __NOTITLE__
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− | | + | Source code, releases, and issues can be found on [https://github.com/gmod/apollo/ GitHub]. |
− | {{ComponentBox|{{ApolloResourcesBoxItem}}|{{ComponentBoxEventsHeader}}|{{SchoolBoxItem|Apollo}}| | |}}
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− | The Apollo genome editor is a Java-based application for browsing and annotating genomic sequences. There are currently two branches of Apollo, one primarily used for genome browsing and maintained at [http://www.ensembl.org Ensembl], and the other primarily used for genome annotation and maintained at the [http://berkeleybop.org/ Berkeley Bioinformatics and Open Source Projects]. The latter is part of the GMOD project. [[WebApollo]] is intended as a successor to Apollo, and is currently under development.
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− | [http://apollo.berkeleybop.org Apollo Homepage]
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− | ==Demo & Screenshots==
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− | See [http://apollo.berkeleybop.org/current/images/mainwindow.jpg this screenshot].
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− | ==Requirements==
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− | JDK 1.5 or higher.
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− | ==Documentation==
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− | ; [http://apollo.berkeleybop.org/current/userguide.html Apollo userguide]
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− | : A comprehensive guide to installing and using Apollo.
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− | ; [[Apollo Tutorial]]
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− | : The Apollo session from the [[GMOD Schools|2009 GMOD Summer Schools]].
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− | ; [[:Image:Gb-2002-3-12-research0082.pdf|Apollo: a sequence annotation editor]]
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− | : The original Apollo publication.
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− | ; Apollo tutorials at the [http://www.dynamicgene.org Dynamic Gene] web site.
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− | : Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are
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− | :* [http://www.dynamicgene.org/annotation/annotation.html Annotation] - how to use Apollo
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− | :* [http://www.dynamicgene.org/resources/resources.html Resources] - how to download sample data and install Apollo on an MS Windows system.
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− | === Presentations ===
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− | * [[Media:CommunityAnnotationNov2007.pdf|Community Annotation at ParameciumDB]] - [[User:Sperling|Linda Sperling's]] presentation on [[ParameciumDB|ParameciumDB's]] [[:Category:Community Annotation|Community Annotation]] process at the [[November 2007 GMOD Meeting]].
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− | * [[Media:Apollo.ppt|Progress Report]] - from [[May 2005 GMOD Meeting]]
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− | * [[Media:Harris 040527.ppt|Future Plans]] - from [[April 2004 GMOD Meeting]]
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− | * [[Media:Apollo.GMOD.ppt|Progress Report]] - from [[September 2003 GMOD Meeting]]
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− | * [[Media:Apollo.GMOD.May2003.ppt|Progress Report]] - from [[May 2003 GMOD Meeting]]
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− | === Development / Bug Tracking ===
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− | * [http://apollo.berkeleybop.org/current/javadoc/ Apollo Javadocs]
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− | * [http://sourceforge.net/tracker/?atid=462763&group_id=27707&func=browse Apollo bug tracker at Sourceforge]
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− | == Mailing Lists ==
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− | {{MailingListsFor|Apollo}}
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− | ==Downloads==
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− | Apollo executables for several platforms (Windows, Mac Os X, Linux, Solaris and generic Unix) are available from the [http://apollo.berkeleybop.org/current/index.html Apollo web site].
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− | The Apollo source code (which you need only if you want to modify Apollo) is available from {{SF_SVN|apollo|SourceForge}} via [[SVN]].
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− | ==Users==
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− | Off the top of the heads of the attendees of the [[November 2007 GMOD Meeting]]. Sorted by version.
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− | * Triggers
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− | ** VMWare
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− | ** Dolan-Rice
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− | * Crabtree
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− | ** Paramecium
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− | ** INRA
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− | ** SFSU (Smith)
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− | * cXML
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− | ** FlyBase
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− | ** BovineBase
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− | ** VectorBase
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− | == Current Development ==
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− | Apollo's functionality is being migrated to the Web as an extension to [[JBrowse]]. For further information please see the [[WebApollo]] pages.
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− | == Logo ==
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− | The [[:Image:ApolloLogo.png|Apollo logo]] was created by [mailto:audra.radke@gmail.com Audra Radke], a participant in the [[Spring 2010 Logo Program]], while a design student at [http://www.linn-benton.edu Linn-Benton Community College].
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| [[Category:Annotation]] | | [[Category:Annotation]] |
| [[Category:Apollo]] | | [[Category:Apollo]] |
− | [[Category:Webapollo]]
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− | [[Category:GMOD Components]]
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| [[Category:Java]] | | [[Category:Java]] |
| + | [[Category:GMOD_Components]] |
| + | [[Category:GMOD_Component]] |
| + | [[Category:WebApollo]] |