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GO Graphic Viewer
Contents
About GO Graphic Viewer
The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the result from the GO::TermFinder Perl module created by the Stanford Microarray Database (SMD). This module is useful when analyzing experimental or computational results that produce a set of gene products that may have a common function or process. This distribution also includes two examples of its use in web browser-based user interfaces (goView.pl and goTermFinder.pl).
Downloads
Using GO Graphic Viewer
System Requirements
- Apache web server
- Perl 5.005 or higher
- GD
- CGI
- GraphViz
- GO::TermFinder
- Bioperl
Documentation
Documentation is provided in the README file in the GO Graphic Viewer download package.
Contacts and Mailing Lists
GO Graphic Viewer Development
Development team
Gavin Sherlock, Stanford University
More on GO Graphic Viewer
Available on platform | web +, linux +, os x + and unix + |
Has URL | http://sourceforge.net/projects/gmod/files/GOView/ + and http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl + |
Has description | The GO Graphic Viewer module (Bio::GMOD::G … The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the result from the GO::TermFinder Perl module created by the Stanford Microarray Database (SMD). This module is useful when analyzing experimental or computational results that produce a set of gene products that may have a common function or process. This distribution also includes two examples of its use in web browser-based user interfaces (goView.pl and goTermFinder.pl).nterfaces (goView.pl and goTermFinder.pl). + |
Has development status | inactive + |
Has input format | gene or ORF names + and OBO ontology + |
Has software maturity status | mature + |
Has support status | active + |
Has topic | GO Graphic Viewer + |
Is open source | Yes + |
Link type | source code + and public server + |
Release date | 2003 + |
Tool functionality or classification | Ontology Visualization + |
Written in language | Perl + |
Has subobjectThis property is a special property in this wiki. | GO Graphic Viewer#http://sourceforge.net/projects/gmod/files/GOView/ + and GO Graphic Viewer#http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl + |