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May 2005 GMOD Meeting
From GMOD
Generic Model Organism Database Construction Set
Meeting 6
May 16-17, 2005 SRI, Menlo Park, CA
Agenda
| 9:00am | Introductions Scott Cain, GMOD coordinator |
| 9:15 | Project updates (short!)
|
| 10:00 | Break |
| 10:15 | cain-050516.ppt My trip to France (setting up ParameciumDB) Scott Cain |
| 10:45 | kenny-050516.ppt Textpresso update Eimear Kenney |
| 11:15 | karp-050516.ppt Pathway Tools Peter Karp |
| 12:00 | Lunch |
| 1:15 | just-050516.ppt Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase Eric Just |
| 2:00 | mungall-050516.ppt chado design, XSL, XML, XORT Pinglei Zhou and Chris Mungall |
| 2:45 | Break |
| 3:00 | kasprzyk-050516.ppt BioMart and chado Arek Kasprzyk |
| 3:45 | oconnor-050516.ppt Turnkey Brian O'Connor |
| 4:30 | Wrap up for the day--items to discuss over dinner Scott Cain |
Tuesday, May 17
| 9:00 | zhang-050517.ppt Comparative genome annotation of D. pseudoobscura and its
implementation in chado |
| 9:45 | sybil for comparative genomics Samuel Angiuoli |
| 10:30 | Break |
| 10:45 | apollo.ppt">Apollo Update Nomi Harris and Mark Gibson |
| 10:45 | smutniak-050516.ppt Transposon Insertions and Transposon Constructs editor Frank Smutniak |
| 12:00 | Lunch |
| 1:15 | harris-050517.ppt Bio::GMOD and standard URLs Todd Harris |
| 2:15 | faga_050517.pdf Interaction Browsers (a presentation prepared at the meeting because the topic came up) Ben Faga |
| 2:30 | Break |
| 3:00 | das.ppt Das2 Lincoln Stein |
| 3:45 | day-050517.ppt Package Management for Bioinformatics Libraries, Applications and Data Allen Day |
| 4:30 | what_next.ppt Wrap up; next meeting, etc (with notes in the presentation from items discussed) Lincoln Stein and Scott Cain |
