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Difference between revisions of "January 2007 GMOD Meeting"

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m (New page: The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off (with...)
 
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The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off (with the agenda here).
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GMOD Generic Model Organism Database
 +
 
 +
==Meeting 9==
 +
 
 +
January 18-19, San Diego CA.
 +
 
 +
The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off.
 +
 
 +
==MOD User Interface Caucus==
 +
 
 +
Report from the UI Caucus: [[MOD_Face_Summary|MOD Interface Summary]]
 +
 
 +
 
 +
==GMOD Middleware==
 +
 
 +
Reports from the Middleware Meeting: [[GMOD Middleware]]
 +
 
 +
 
 +
===Agenda===
 +
 
 +
<ul>
 +
<li>9:00 AM - 9:05 AM <b>Introduction, Eric Just</b></li>
 +
<li>9:05 AM - 9:30 AM <b>Object/relational Mapping Principles, Sohel Merchant</b></li>
 +
<li>9:30 AM - 9:55 AM <b>XORT, Pinglei Zhou</b></li>
 +
<li>9:55 AM - 10:20 AM <b>Chado::AutoDBI, Brian O'Connor</b></li>
 +
<li>10:20 AM - 10:35 AM <b>Coffee Break</b></li>
 +
<li>10:35 AM - 11:00 AM <b>Modware, Eric Just</b></li>
 +
<li>11:00 AM - 11:20 AM <b>GBrowse (DasI) Adaptor, Scott Cain</b></li>
 +
<li>11:20 AM - 11:45 AM <b>iBatis, Jeff Bowes</b></li>
 +
<li>11:45 AM - 1:15 PM <b>LUNCH</b></li>
 +
<li>1:15 PM - 1:40 PM <b>Hibernate, Robert Bruggner</b></li>
 +
<li>1:40 PM - 2:05 PM <b>PSU Chado Interface, Chinmay Patel</b></li>
 +
<li>2:05 PM - 2:20 PM <b>Coffee Break</b></li>
 +
<li>2:20 PM - 2:45 PM <b>GUS Web Development Kit (not GUS-specific), Steve Fischer</b></li>
 +
<li>2:45 PM - 3:10 PM <b>InterMine/FlyMine data warehousing, Gos Micklem</b></li>
 +
<li>3:10 PM - 4:30 PM <b>Wrap up (Eric Just, Scott Cain, Brian Osborne), discussion</b></li>
 +
</ul>
 +
 
 +
==Attendees==
  
 
The meeting was well attended, with about 60 people from a large variety of organizations:
 
The meeting was well attended, with about 60 people from a large variety of organizations:
  
−
Peter Karp EcoCyc
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<table>
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Richard Bruskiewich IRRI/IRIS + Generation Challenge Programme
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<tr><td>Peter Karp</td><td>EcoCyc</td></tr>
−
Kate Rosenbloom UCSC Genome Bioinformatics Group
+
<tr><td>Richard Bruskiewich</td><td>IRRI/IRIS + Generation Challenge Programme</td></tr>
−
Zhiliang Hu Iowa State University
+
<tr><td>Kate Rosenbloom</td><td>UCSC Genome Bioinformatics Group</td></tr>
−
Robert Wilson FlyBase
+
<tr><td>Zhiliang Hu</td><td>Iowa State University</td></tr>
−
Sohel Merchant DictyBase
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<tr><td>Robert Wilson</td><td>FlyBase</td></tr>
−
Chinmay Patel GeneDB
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<tr><td>Sohel Merchant</td><td>DictyBase</td></tr>
−
pinglei zhou FlyBase
+
<tr><td>Chinmay Patel</td><td>GeneDB</td></tr>
−
Prachi Shah Candida Genome Database
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<tr><td>pinglei zhou</td><td>FlyBase</td></tr>
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Vivien Bonazzi NHGRI
+
<tr><td>Prachi Shah</td><td>Candida Genome Database</td></tr>
−
Jay Sundaram TIGR
+
<tr><td>Vivien Bonazzi</td><td>NHGRI</td></tr>
−
Peter Karp EcoCyc
+
<tr><td>Jay Sundaram</td><td>TIGR</td></tr>
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Ben Faga GMOD
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<tr><td>Peter Karp</td><td>EcoCyc</td></tr>
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George Kowalski RGD
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<tr><td>Ben Faga</td><td>GMOD</td></tr>
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Dave Matthews GrainGenes
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<tr><td>George Kowalski</td><td>RGD</td></tr>
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Brian Osborne NESCent
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<tr><td>Dave Matthews</td><td>GrainGenes</td></tr>
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Eric Just DictyBase
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<tr><td>Brian Osborne</td><td>NESCent</td></tr>
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Susan Bromberg RGD
+
<tr><td>Eric Just</td><td>DictyBase</td></tr>
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Eva Huala TAIR
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<tr><td>Susan Bromberg</td><td>RGD</td></tr>
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Allen GMOD
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<tr><td>Eva Huala</td><td>TAIR</td></tr>
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Sheldon McKay WormBase
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<tr><td>Allen</td><td>GMOD</td></tr>
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Todd Harris WormBase
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<tr><td>Sheldon McKay</td><td>WormBase</td></tr>
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Kim Pruitt NCBI
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<tr><td>Todd Harris</td><td>WormBase</td></tr>
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Karla Gendler ChromDB (www.chromdb.org)
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<tr><td>Kim Pruitt</td><td>NCBI</td></tr>
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Donghui Li TAIR
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<tr><td>Karla Gendler</td><td>ChromDB (www.chromdb.org)</td></tr>
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Gos Micklem FlyMine/InterMine
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<tr><td>Donghui Li</td><td>TAIR</td></tr>
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Ning Wei TAMU
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<tr><td>Gos Micklem</td><td>FlyMine/InterMine</td></tr>
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Brian Osborne NESCent
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<tr><td>Ning Wei</td><td>TAMU</td></tr>
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Sofia Robb PlanariaDB
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<tr><td>Brian Osborne</td><td>NESCent</td></tr>
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steve fischer GUS/PlasmoDB
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<tr><td>Sofia Robb</td><td>PlanariaDB</td></tr>
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Brian O'Connor UCLA
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<tr><td>steve fischer</td><td>GUS/PlasmoDB</td></tr>
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Arek Kasprzyk EBI
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<tr><td>Brian O'Connor</td><td>UCLA</td></tr>
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Robert Bruggner VectorBase
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<tr><td>Arek Kasprzyk</td><td>EBI</td></tr>
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Susan Bridges AgBase
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<tr><td>Robert Bruggner</td><td>VectorBase</td></tr>
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Lincoln Stein WormBase
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<tr><td>Susan Bridges</td><td>AgBase</td></tr>
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Madeline A. Crosby FlyBase
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<tr><td>Lincoln Stein</td><td>WormBase</td></tr>
−
Robert Buels SGN
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<tr><td>Madeline A. Crosby</td><td>FlyBase</td></tr>
−
Dianna Fisk SGD
+
<tr><td>Robert Buels</td><td>SGN</td></tr>
−
Sohel Merchant DictyBase
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<tr><td>Dianna Fisk</td><td>SGD</td></tr>
−
Bob Muller TAIR
+
<tr><td>Sohel Merchant</td><td>DictyBase</td></tr>
−
Suzanne Paley EcoCyc
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<tr><td>Bob Muller</td><td>TAIR</td></tr>
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Hanni Salih BovineGenome.org
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<tr><td>Suzanne Paley</td><td>EcoCyc</td></tr>
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Peili Zhang FlyBase
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<tr><td>Hanni Salih</td><td>BovineGenome.org</td></tr>
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Eric Ross PlanariaDB
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<tr><td>Peili Zhang</td><td>FlyBase</td></tr>
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Manuel J Torres Plant Genome Mapping Lab, UGA
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<tr><td>Eric Ross</td><td>PlanariaDB</td></tr>
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James Reecy Animalgenome.org
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<tr><td>Manuel J Torres</td><td>Plant Genome Mapping Lab, UGA</td></tr>
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Eileen Kraemer ApiDB
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<tr><td>James Reecy</td><td>Animalgenome.org</td></tr>
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Brian O'Connor UCLA
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<tr><td>Eileen Kraemer</td><td>ApiDB</td></tr>
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Jim Hu EcoliHub/EcoliWiki
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<tr><td>Brian O'Connor</td><td>UCLA</td></tr>
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Justin Reese BeeBase, Bovine Genome Database
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<tr><td>Jim Hu</td><td>EcoliHub/EcoliWiki</td></tr>
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Victor Strelets FlyBase
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<tr><td>Justin Reese</td><td>BeeBase, Bovine Genome Database</td></tr>
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Josh Goodman FlyBase
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<tr><td>Victor Strelets</td><td>FlyBase</td></tr>
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Christine Elsik BeeBase, Bovine Genome Database
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<tr><td>Josh Goodman</td><td>FlyBase</td></tr>
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Anand Venkatraman BeeBase
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<tr><td>Christine Elsik</td><td>BeeBase, Bovine Genome Database</td></tr>
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Haiyan Zhang FlyBase
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<tr><td>Anand Venkatraman</td><td>BeeBase</td></tr>
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Don Gilbert wFleaBase, DroSpeGe
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<tr><td>Haiyan Zhang</td><td>FlyBase</td></tr>
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David Adelson bovinegenome.org
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<tr><td>Don Gilbert</td><td>wFleaBase, DroSpeGe</td></tr>
−
Ceri Van Slyke ZFIN
+
<tr><td>David Adelson</td><td>bovinegenome.org</td></tr>
−
Joshua Orvis TIGR
+
<tr><td>Ceri Van Slyke</td><td>ZFIN</td></tr>
−
Kathleen Falls FlyBase
+
<tr><td>Joshua Orvis</td><td>TIGR</td></tr>
−
Jeff Bowes XenBase
+
<tr><td>Kathleen Falls</td><td>FlyBase</td></tr>
−
Susan Bello MGI
+
<tr><td>Jeff Bowes</td><td>XenBase</td></tr>
−
Joel Richardson MGI
+
<tr><td>Susan Bello</td><td>MGI</td></tr>
−
Scott Cain GMOD
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<tr><td>Joel Richardson</td><td>MGI</td></tr>
 +
<tr><td>Scott Cain</td><td>GMOD</td></tr>
 +
</table>
 +
 
 +
 
 +
 
  
 
[[Category:Meetings]]
 
[[Category:Meetings]]

Revision as of 18:22, 6 April 2007

GMOD Generic Model Organism Database

Meeting 9

January 18-19, San Diego CA.

The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off.

MOD User Interface Caucus

Report from the UI Caucus: MOD Interface Summary


GMOD Middleware

Reports from the Middleware Meeting: GMOD Middleware


Agenda

  • 9:00 AM - 9:05 AM Introduction, Eric Just
  • 9:05 AM - 9:30 AM Object/relational Mapping Principles, Sohel Merchant
  • 9:30 AM - 9:55 AM XORT, Pinglei Zhou
  • 9:55 AM - 10:20 AM Chado::AutoDBI, Brian O'Connor
  • 10:20 AM - 10:35 AM Coffee Break
  • 10:35 AM - 11:00 AM Modware, Eric Just
  • 11:00 AM - 11:20 AM GBrowse (DasI) Adaptor, Scott Cain
  • 11:20 AM - 11:45 AM iBatis, Jeff Bowes
  • 11:45 AM - 1:15 PM LUNCH
  • 1:15 PM - 1:40 PM Hibernate, Robert Bruggner
  • 1:40 PM - 2:05 PM PSU Chado Interface, Chinmay Patel
  • 2:05 PM - 2:20 PM Coffee Break
  • 2:20 PM - 2:45 PM GUS Web Development Kit (not GUS-specific), Steve Fischer
  • 2:45 PM - 3:10 PM InterMine/FlyMine data warehousing, Gos Micklem
  • 3:10 PM - 4:30 PM Wrap up (Eric Just, Scott Cain, Brian Osborne), discussion

Attendees

The meeting was well attended, with about 60 people from a large variety of organizations:

Peter KarpEcoCyc
Richard BruskiewichIRRI/IRIS + Generation Challenge Programme
Kate RosenbloomUCSC Genome Bioinformatics Group
Zhiliang HuIowa State University
Robert WilsonFlyBase
Sohel MerchantDictyBase
Chinmay PatelGeneDB
pinglei zhouFlyBase
Prachi ShahCandida Genome Database
Vivien BonazziNHGRI
Jay SundaramTIGR
Peter KarpEcoCyc
Ben FagaGMOD
George KowalskiRGD
Dave MatthewsGrainGenes
Brian OsborneNESCent
Eric JustDictyBase
Susan BrombergRGD
Eva HualaTAIR
AllenGMOD
Sheldon McKayWormBase
Todd HarrisWormBase
Kim PruittNCBI
Karla GendlerChromDB (www.chromdb.org)
Donghui LiTAIR
Gos MicklemFlyMine/InterMine
Ning WeiTAMU
Brian OsborneNESCent
Sofia RobbPlanariaDB
steve fischerGUS/PlasmoDB
Brian O'ConnorUCLA
Arek KasprzykEBI
Robert BruggnerVectorBase
Susan BridgesAgBase
Lincoln SteinWormBase
Madeline A. CrosbyFlyBase
Robert BuelsSGN
Dianna FiskSGD
Sohel MerchantDictyBase
Bob MullerTAIR
Suzanne PaleyEcoCyc
Hanni SalihBovineGenome.org
Peili ZhangFlyBase
Eric RossPlanariaDB
Manuel J TorresPlant Genome Mapping Lab, UGA
James ReecyAnimalgenome.org
Eileen KraemerApiDB
Brian O'ConnorUCLA
Jim HuEcoliHub/EcoliWiki
Justin ReeseBeeBase, Bovine Genome Database
Victor StreletsFlyBase
Josh GoodmanFlyBase
Christine ElsikBeeBase, Bovine Genome Database
Anand VenkatramanBeeBase
Haiyan ZhangFlyBase
Don GilbertwFleaBase, DroSpeGe
David Adelsonbovinegenome.org
Ceri Van SlykeZFIN
Joshua OrvisTIGR
Kathleen FallsFlyBase
Jeff BowesXenBase
Susan BelloMGI
Joel RichardsonMGI
Scott CainGMOD
Retrieved from "http://gmod.org/mediawiki/index.php?title=January_2007_GMOD_Meeting&oldid=2221"