NOTE: We are working on migrating this site away from MediaWiki, so editing pages will be disabled for now.
Difference between revisions of "WebApollo"
(→Introduction) |
Ian Holmes (Talk | contribs) |
||
| Line 12: | Line 12: | ||
# an annotation tracking system designed to support collaborative genome research projects | # an annotation tracking system designed to support collaborative genome research projects | ||
| − | The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or [http://berkeleybop.org/ BBOP]) and [http://genomes.arc.georgetown.edu/elsiklab/ Chris Elsik]'s group at Georgetown. | + | The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or [http://berkeleybop.org/ BBOP]), the JBrowse project in Ian Holmes' [http://biowiki.org/HolmesLab group] at Berkeley, and [http://genomes.arc.georgetown.edu/elsiklab/ Chris Elsik]'s group at Georgetown. |
(Funding?) | (Funding?) | ||
Revision as of 18:52, 28 February 2012
Contents
Introduction
The Apollo genome annotation editor, which is a Java application, allows users to view, create, and edit genomic annotations in a graphical environment. WebApollo is a new project that aims to provide similar functionality in a client-server web-based environment.
Our overall goal is to develop a lightweight Web 2.0 infrastructure that will offer easy-to-use tools for collaborative genome annotation. This includes the design and implementation of:
- a web browser-based version of Apollo built on top of JBrowse
- full support for two-way client-server exchange of genome annotations (DAS2)
- an annotation tracking system designed to support collaborative genome research projects
The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or BBOP), the JBrowse project in Ian Holmes' group at Berkeley, and Chris Elsik's group at Georgetown.
(Funding?)
Project members
- Suzanna Lewis (PI, LBNL)
- Ian Holmes (PI, UC Berkeley)
- Chris Elsik (PI, Georgetown)
- Chris Childers (Georgetown)
- Nomi Harris (LBNL)
- Gregg Helt (LBNL)
- Ed Lee (LBNL)
- Monica Munoz-Torres (Georgetown)
- Justin Reese (Georgetown)
- (Mitch Skinner (no longer at UC Berkeley))
- (Jay Sundaram (no longer at Georgetown))
Links
- Client source on github
- Annotation editing engine server source code on Google Code
- Data model and I/O layer code used by editing engine on Google Code
- Trellis server code on Google Code
- Apollo Web service API
Meetings
Project meetings normally take place on Mondays at 1:30pm California time. On the last Monday of the month we meet at 9am California time.
- Minutes for 4/11/2011
- Minutes for 4/4/2011
- Minutes for 3/21/2011
- Notes from meeting on 3/15/2011
- Agenda and minutes for 3/14/2011
- Agenda and minutes for 1/13/2011
- Agenda and minutes for 1/6/2011
- Agenda and minutes for 12/16/2010
- Minutes for 12/9/2010
- Minutes for 11/18/2010
- Notes from WebApollo Hackathon, Healdsburg, CA, Sept 27 - Oct 1, 2010
