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Revision as of 23:59, 21 May 2010
This page lists most of the mailing lists relevant to GMOD. The default location for GMOD related lists is SourceForge, but lists are actually implemented on various servers all over the world.
The lists are broken into 3 categories:
We also include pointers to a few non GMOD lists that are of general interest.
Searching Email Lists
GMOD's default mailing list server is Sourceforge. Sourceforge, however, has a notoriously hard to use mail archive search facility. Therefore, we try to archive mailing lists on sites that have friendlier search facilites, such as Nabble (old and new), Gmane.org, and Google groups. The tables below link to these archives, whenever they exist.
Overview Lists
Topic | List Link | Comment | Archive(s) |
---|---|---|---|
Announcements | gmod-announce | Low volume GMOD announcements. Moderated. | Gmane |
Architecture | gmod-architecture | GMOD architecture working group list. Very low traffic. | |
GMOD Developers List | gmod-devel | General GMOD developer list. | Gmane |
Component Lists
Mailing lists about specific GMOD Components.
Component | List Link(s) | Comment | Archive(s) |
---|---|---|---|
Apollo | apollo | Apollo mailing list | |
gmod-apollo-cmts | Apollo code updates. | ||
Bio::Graphics | gmod-biographics-commits | Bio::Graphics code updates. | |
BioMart | announce | BioMart announcements mailing list | Nabble (2010/06+) |
users | BioMart users, developers, code and installation | Nabble (2010/06+) | |
Chado | gmod-schema | All Chado issues | |
gmod-schema-cmts | Chado code updates. | ||
CMap | gmod-cmap | Discussion of CMap development, installation problems, etc. | Nabble (2010/05+), Sourceforge |
gmod-cmap-commits | Notification of SVN activity for CMap. | Sourceforge | |
DIYA | diyg-pub-l | DIYA general discussion and support. | Nabble (2010/05+) |
diyg-dev-l | DIYA developer discussion. | ||
Ergatis | ergatis-users | Ergatis users mailing list. | |
announcement | Ergatis announcements. | ||
ergatis-devel | Ergatis developers. | ||
Galaxy (Search everything) |
galaxy-announce | Announcements of interest to the Galaxy community. Low volume and moderated. | Nabble, Mailman |
Galaxy Help | General questions and discussion about using Galaxy. Also used for announcements relevant to the Galaxy user community. This is not a mailing list, but an online forum, based on the popular Discourse platform. High volume. | ||
galaxy-dev | Discussion and questions regarding local installations and development of Galaxy. Medium volume. | Nabble, Mailman | |
GBrowse | gmod-gbrowse | GBrowse users and developers. | |
gmod-gbrowse-cmts | GBrowse code updates. | ||
InterMine | dev | InterMine support and development list. | |
JBrowse | gmod-ajax | AJAX based genome browser. | |
MAKER | maker-devel | MAKER developers and users list. | |
Modware | gmod-ware-users | Modware mailing list. | |
Pathway Tools | biocyc-users | Pathway Tools users mailing list. | |
Sybil | sybil-info | Sybil mailing list. | |
Textpresso | There is no mailing list for Textpresso. Use the Textpresso Feedback Form to ask questions. See the User Guide for help. | ||
Tripal | gmod-tripal | Tripal-related announcements, questions, and requests for help from developers and the community. | Nabble (2010/05+), Sourceforge |
gmod-tripal-devel | Tripal development list | Nabble, Sourceforge | |
Turnkey | turnkey-users | Turnkey user list. | |
turnkey-devel | Turnkey development list. | ||
turnkey-cmts | Turnkey code updates. |
Inactive Lists
As of August 2008, these lists have not had postings in the past 12 months.
List | Comment |
---|---|
gmod-chado-seq-ad | Last post November 2006. |
gmod-citrina | Citrina mailing list. Last post June 2006. Citrina is no longer supported by GMOD. |
gmod-cmae | CMAE mailing list. Last post July 2007. |
gmod-das2-cmts | Distributed Annotation System mailing list. Last commit June 2007. |
gmod-gene-page | Last post December 2005. This topic was restarted at the July 2008 GMOD Meeting and the discussion is now happening on the gmod-devel list. So, the list is dead, but not the topic. |
gmod-ontol-sw-dev | Coordination of software and architecture for ontologies. |
gmod-pubsearch-dv | PubSearch mailing list. |
gmod-resources | Last post July 2005. |
gmod-web-cmts | Last post December 2004. |
gmod-web-dev | No archive exists. Probably inactive, replaced by turnkey-devel |
A Few Non GMOD Lists
There are a couple of mailing lists that, while not affiliated with GMOD, often have content of interest to the GMOD community.
List Link(s) | Comment |
---|---|
Biocurator | List for biological data curators and informatics people who support them. If you are interested in how biological databases are created, maintained and used, then subscribe to this list. |
Bioperl-l | Primary BioPerl mailing list and is meant both for developers as well as people who are interested in project issues and internals. The place where usage, code modifications, bugs & feature requests are discussed. If you do development with any of GMOD's Perl based components then this is a useful list. |
OBF cross-project | This list is for Open Bioinformatics Foundation (OBF) projects to cross talk such as for OBDA and BioSQL issues. |